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When the Go runtime starts it creates an OS thread for each CPU core. This means if you have a 16 core machine the Go runtime will create 16 OS threads - regardless of any CGroup CPU Limits. The Go runtime then uses these OS threads to schedule goroutines.
The problem is that the Go runtime is not aware of the CGroup CPU limits and will happily schedule goroutines on all 16 OS threads. This means that the Go runtime will expect to be able to use 16 seconds of CPU time every second.
Long stop the world durations arise from the Go runtime needing to stop Goroutine on threads that it’s waiting for the Linux Scheduler to schedule. These threads will not be scheduled once the container has used it’s CPU quota.
For more info please follow: https://www.riverphillips.dev/blog/go-cfs